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The almost, but not entirely, complete
Pinky, are you pondering what I'm pondering?' list

B: It must be inordinately taxing to be such a boob.
P: You have no idea.

(1st season on Animaniacs)
AN 102 - Win Big
B: Pinky, AYPWIP?
P: Uh, I think so, Brain, but where will we find a duck and a hose at this hour?

AN 109 - Where Rodents Dare
B: Pinky, AYPWIP?
P: I think so, but where will we find an open tattoo parlor at this time of night? ***

AN 115 - Battle for the Planet
B: Pinky, AYPWIP?
P: Wuh, I think so, Brain, but if we didn't have ears, we'd look like weasels.

AN 118 - Pavlov's Mice
B: Are you thinking what I'm thinking, Pinky? ***
P: Uh... yeah, Brain, but where are we going to find rubber pants our size? ***

AN 124 - Opportunity Knox
B: Pinky, AYPWIP?
P: Uh, I think so, Brain, but balancing a family and a career ... oooh, it's all too much for me.

AN 127 - Jockey for Position
B: Pinky, AYPWIP?
P: Wuh, I think so, Brain, but isn't Regis Philbin already married?

AN 134 - Bubba Bo Bob Brain
B: Pinky, AYPWIP?
P: Uh, I think so, Brain, but burlap chafes me so.

AN 138 - Spell-Bound
B: AYPWIP, Pinky? ***
P: Sure, Brain, but how are we going to find chaps our size? ***
AN 140 - Puppet Rulers
B: Pinky, AYPWIP?
P: Uh, I think so, Brain, but we'll never get a monkey to use dental floss.

AN 144 - The World Can Wait
B: Pinky, AYPWIP?
P: Uh, I think so, Brain, but this time, you wear the tutu.

AN 147 - When Mice Ruled the Earth
B: Pinky, AYPWIP?
P: I think so, Brain, but culottes have a tendency to ride up so.

AN 152 - Yes, Always
***** NOT PERFORMED *****

AN 154 - Brain Meets Brawn
B: Pinky, AYPWIP?
P: I think so, Brain, but if they called them sad meals, kids wouldn't buy them.

AN 156 - The Helpinky Formula
B: Pinky, AYPWIP?
P: I think so, Brain, but me and Pippi Longstocking... I mean, what would the children look like?

AN 158 - Meet John Brain
B: Pinky, AYPWIP?
P: I think so, Brain, but this time, you put the trousers on the chimp.

AN 160 - The Cranial Crusader
B: Pinky, AYPWIP?
P: Well, I think so, Brain, but I can't memorize a whole opera in Yiddish.

(From The Pinky and the Brain show 1995)

Das Mouse
B- Pinky, AYPWIP?
P- I think so Brain, but there's already a bug stuck in here from last time. (pointing between teeth)

Of Mouse and Man
B-Pinky, AYPWIP?
P- I think so Brain, but I get all clammy inside the tent.

Tokyo Grows
B- Pinky, AYPWIP?
P- I think so Brain, but I don't think Kay Ballard is in the union.

That Smarts
B- Pinky, AYPWIP?
P- Yes I am.

Pinky and the Fog
B- Pinky, AYPWIP?
P- I think so Brain, but the Rockettes, it's mostly girls, isn't it?

Where No Mouse Has Gone Before
B- AYPWIP?
P- I think so Brain, but pants with horizontal stripes make me look chubby.

Brainainia
B- Pinky, AYPWIP?
P- I think so Brain, but pantyhose are so uncomfortable in the summer time.

TV or not TV
B- Pinky, AYPWIP?
P- I think so Brain, but it's a miracle that this one grew back (holding left leg).

Napolean Brainaparte
B- Pinky, AYPWIP?
P- Uh, I think so Brain, but you'd have to take that whole bridge apart then, wouldn't you?

B- We are France, and soon, we are the world!
P- Are we the children Brain?

From The Pinky and the Brain Christmas Special (A DC Comic)
B- Pinky, AYPWIP?
P- Uh, I think so Brain, but how are we gonna teach a goat to dance with flippers on?

A Pinky and the Brain Christmas (TV show, not the same as above mentioned comic)
B- Pinky, AYPWIP?
P- I think so Brain, but apply north to what?(you have to see it in context to get it unfortunately.)

Snowball
B- Pinky, AYPWIP?
P- Uh, I think so Brain, but Snowball for windows?

Around the World in 80 Narfs
B- AYPWIP Pinky?
P- Uh, I think so Brain, no, no, it's too stupid.
B- We will disguise ourselves as a cow.
P- Narf! That was it exactly!

B- Sancho Pinky, AYPWIP?
P- Uh, I think so Don Cerebro, but why would Sophia Loren do a musical?

B- Pinky, AYPWIP?
P- I think so, but what if the chicken won't wear the nylons?

B- Pinky, AYPWIP?
P- I think so Brain, but isn't that why they invented tube socks?